tbr1 protein (Takifugu rubripes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

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experimentally determined

co-expression

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gene neighborhood

gene co-occurrence

gene fusions

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[Homology]

Score

tbr1

T-box brain transcription factor 1b. (677 aa)

Predicted Functional Partners:

zic1

0.789

egr2

0.783

mixl1

0.756

cask

0.723

egr3

0.711

Plagl2

0.702

snx33

0.700

enc1

0.689

satb2

0.665

LOC101068612

0.641

Your Current Organism:

Takifugu rubripes

NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC101068612	mixl1	ENSTRUP00000072675	ENSTRUP00000037579	Forkhead box H1.	Mix paired-like homeobox.	0.778
LOC101068612	tbr1	ENSTRUP00000072675	ENSTRUP00000012433	Forkhead box H1.	T-box brain transcription factor 1b.	0.641
Plagl2	enc1	ENSTRUP00000058532	ENSTRUP00000047383	Pleiomorphic adenoma gene-like 2.	Ectodermal-neural cortex 1.	0.710
Plagl2	tbr1	ENSTRUP00000058532	ENSTRUP00000012433	Pleiomorphic adenoma gene-like 2.	T-box brain transcription factor 1b.	0.702
cask	tbr1	ENSTRUP00000029455	ENSTRUP00000012433	Calcium/calmodulin-dependent serine protein kinase b; Belongs to the MAGUK family.	T-box brain transcription factor 1b.	0.723
egr2	egr3	ENSTRUP00000001567	ENSTRUP00000004923	Early growth response 2b.	Early growth response 3.	0.981
egr2	tbr1	ENSTRUP00000001567	ENSTRUP00000012433	Early growth response 2b.	T-box brain transcription factor 1b.	0.783
egr3	egr2	ENSTRUP00000004923	ENSTRUP00000001567	Early growth response 3.	Early growth response 2b.	0.981
egr3	tbr1	ENSTRUP00000004923	ENSTRUP00000012433	Early growth response 3.	T-box brain transcription factor 1b.	0.711
enc1	Plagl2	ENSTRUP00000047383	ENSTRUP00000058532	Ectodermal-neural cortex 1.	Pleiomorphic adenoma gene-like 2.	0.710
enc1	snx33	ENSTRUP00000047383	ENSTRUP00000041162	Ectodermal-neural cortex 1.	Sorting nexin.	0.543
enc1	tbr1	ENSTRUP00000047383	ENSTRUP00000012433	Ectodermal-neural cortex 1.	T-box brain transcription factor 1b.	0.689
enc1	zic1	ENSTRUP00000047383	ENSTRUP00000045520	Ectodermal-neural cortex 1.	Zic family member 1 (odd-paired homolog, Drosophila).	0.694
mixl1	LOC101068612	ENSTRUP00000037579	ENSTRUP00000072675	Mix paired-like homeobox.	Forkhead box H1.	0.778
mixl1	tbr1	ENSTRUP00000037579	ENSTRUP00000012433	Mix paired-like homeobox.	T-box brain transcription factor 1b.	0.756
satb2	tbr1	ENSTRUP00000039323	ENSTRUP00000012433	DNA-binding protein SATB.	T-box brain transcription factor 1b.	0.665
snx33	enc1	ENSTRUP00000041162	ENSTRUP00000047383	Sorting nexin.	Ectodermal-neural cortex 1.	0.543
snx33	tbr1	ENSTRUP00000041162	ENSTRUP00000012433	Sorting nexin.	T-box brain transcription factor 1b.	0.700
snx33	zic1	ENSTRUP00000041162	ENSTRUP00000045520	Sorting nexin.	Zic family member 1 (odd-paired homolog, Drosophila).	0.614
tbr1	LOC101068612	ENSTRUP00000012433	ENSTRUP00000072675	T-box brain transcription factor 1b.	Forkhead box H1.	0.641