STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
meox1Mesenchyme homeobox 1. (253 aa)    
Predicted Functional Partners:
myf5
Myogenic factor.
   
 
 0.678
prdm1
Uncharacterized protein.
   
  
 0.669
ccnb1
Cyclin B1; Belongs to the cyclin family.
      
 0.660
LOC101071517
SRY-box transcription factor 6.
      
 0.660
myog
Myogenin.
   
 
 0.603
meox2
Mesenchyme homeobox 2b.
   
  
0.559
LOC101070619
Uncharacterized protein.
    
 0.556
ELFN1
Extracellular leucine rich repeat and fibronectin type III domain containing 1.
   
  
 0.555
LOC101076978
BMERB domain-containing protein.
      
 0.544
LOC101077164
Zinc finger protein 740b.
    
 0.539
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.