STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
meox1Mesenchyme homeobox 1. (253 aa)    
Predicted Functional Partners:
meox2
Mesenchyme homeobox 2b.
   
   0.927
LOC101070955
T-box transcription factor 6.
    
 
 0.642
chmp1b
Chromatin modifying protein 1B.
    
   0.641
chmp1a
Charged multivesicular body protein 1A.
    
   0.641
tcf15
Transcription factor 15.
    
 
 0.634
H2VBZ6_TAKRU
Ripply transcriptional repressor 2.
      
 0.633
pax9
Paired box 9.
    
 
 0.629
LOC101070619
Uncharacterized protein.
    
 0.588
tbl2
MYB binding protein (P160) 1a.
      
 0.563
LOC101077164
Zinc finger protein 740b.
    
 
 0.553
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.