STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
nifkNucleolar protein interacting with the FHA domain of MKI67. (286 aa)    
Predicted Functional Partners:
rsl1d1
Ribosomal L1 domain containing 1.
   
 
 0.997
H2TBQ8_TAKRU
Ribosome biogenesis regulatory protein; Involved in ribosomal large subunit assembly. Belongs to the RRS1 family.
   
 
 0.996
rpf2
Ribosome production factor 2 homolog.
   
 
 0.996
ebna1bp2
EBNA1 binding protein 2.
   
 
 0.993
noc2l
NOC2-like nucleolar associated transcriptional repressor.
   
 
 0.993
nip7
60S ribosome subunit biogenesis protein NIP7 homolog; Required for proper 34S pre-rRNA processing and 60S ribosome subunit assembly; Belongs to the NIP7 family.
   
 
 0.992
brix1
Brix domain containing 2.
   
 
 0.992
pum3
Pumilio RNA-binding family member 3.
   
 
 0.992
nop58
NOP58 ribonucleoprotein homolog (yeast).
   
 
 0.991
rbm28
RNA binding motif protein 28.
   
 
 0.991
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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