Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
SLC25A28Solute carrier family 25 member 28; Belongs to the mitochondrial carrier (TC 2.A.29) family. (393 aa)    
Predicted Functional Partners:
nars2
Asparaginyl-tRNA synthetase 2, mitochondrial.
 
      0.896
fxn
Frataxin.
    
 
 0.830
iscu
Iron-sulfur cluster assembly enzyme; Scaffold protein for the de novo synthesis of iron-sulfur (Fe-S) clusters within mitochondria, which is required for maturation of both mitochondrial and cytoplasmic [2Fe-2S] and [4Fe-4S] proteins.
   
  
 0.649
Fech
Protoporphyrin/coproporphyrin ferrochelatase.
   
  
 0.614
abcb10
ATP-binding cassette, sub-family B (MDR/TAP), member 10.
    
 
 0.613
rrp9
Ribosomal RNA processing 9, U3 small nucleolar RNA binding protein.
   
  
 0.567
mrpl4
Mitochondrial ribosomal protein L4.
    
 
 0.556
mrs2
Magnesium transporter.
   
 
 0.550
abcb7
ATP-binding cassette, sub-family B (MDR/TAP), member 7.
    
 
 0.527
gys1
Glycogen [starch] synthase; Transfers the glycosyl residue from UDP-Glc to the non- reducing end of alpha-1,4-glucan.
      
 0.486
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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