STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
skilSKI-like proto-oncogene a. (783 aa)    
Predicted Functional Partners:
ski
Ski oncogene isoform X1.
    
 
0.997
SMAD4
Mothers against decapentaplegic homolog.
    
 0.989
LOC101072080
Mothers against decapentaplegic homolog.
    
 0.989
ncor1
Nuclear receptor corepressor 1.
   
 0.957
LOC101068466
Mothers against decapentaplegic homolog 4-like.
    
 0.902
ENSTRUP00000076792
annotation not available
    
 0.902
smad3
Mothers against decapentaplegic homolog.
   
 0.901
LOC101074868
MH1 domain-containing protein.
   
 0.901
LOC101072871
Mothers against decapentaplegic homolog.
   
 0.901
LOC101076671
V-ski avian sarcoma viral oncogene homolog b.
     
 
0.900
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.