STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
gtf3aGeneral transcription factor IIIA, b. (341 aa)    
Predicted Functional Partners:
gsx1
Homeobox protein GSH.
    
 
 0.697
abhd10
Transgelin 3b.
   
 
 0.693
POC1A
POC1 centriolar protein A.
    
 0.625
wdr83os
WD repeat domain 83 opposite strand.
      
 0.621
SBSPON
Somatomedin B and thrombospondin type 1 domain containing.
    
 
 0.580
LOC101075116
Lin-28 homolog A.
    
 0.580
LOC101071102
Flavodoxin_2 domain-containing protein.
      
 0.579
LOC101077403
Uncharacterized protein.
    
 0.548
polr3g
Polymerase (RNA) III (DNA directed) polypeptide G.
    
 0.548
wdr83
WD repeat domain containing 83.
   
 0.518
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.