STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
tnfaip1Tumor necrosis factor, alpha-induced protein 1 (endothelial). (355 aa)    
Predicted Functional Partners:
ubxn1
UBX domain protein 1.
   
 
 0.801
ubxn7
UBX domain protein 7.
    
 
 0.778
UBXN7
UBX domain protein 7.
    
 
 0.778
cul3
Cullin 3a; Belongs to the cullin family.
    
 0.748
faf1
Fas (TNFRSF6) associated factor 1.
    
 
 0.673
rnd3
Rho family GTPase 3a.
    
 0.613
LOC101070569
Rho family GTPase 2.
    
 0.611
LOC101074036
Rho family GTPase 2.
    
 0.611
LOC101064615
Rho family GTPase 1b.
    
 0.541
RND1
Rho family GTPase 1.
    
 0.541
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.