STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tnfaip1Tumor necrosis factor, alpha-induced protein 1 (endothelial). (355 aa)    
Predicted Functional Partners:
ubxn7
UBX domain protein 7.
    
 
 0.884
UBXN7
UBX domain protein 7.
    
 
 0.884
ubxn1
UBX domain protein 1.
   
 
 0.704
cul3
Cullin 3a; Belongs to the cullin family.
    
 0.671
faf1
Fas (TNFRSF6) associated factor 1.
    
 
 0.609
LOC101070569
Rho family GTPase 2.
    
 0.503
LOC101074036
Rho family GTPase 2.
    
 0.503
rnd3
Rho family GTPase 3a.
    
 0.473
LOC101064615
Rho family GTPase 1b.
    
 0.473
RND1
Rho family GTPase 1.
    
 0.473
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.