GRIK5 protein (Takifugu rubripes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

GRIK5

Glutamate ionotropic receptor kainate type subunit 5. (1093 aa)

Predicted Functional Partners:

ak9

0.761

LOC101073376

0.554

GRIK2

0.554

LOC101075174

0.554

LOC101079464

0.554

GRIK2-2

0.554

GRIK3

0.554

LOC101061845

0.540

LOC101062570

0.483

ENSTRUP00000038486

0.471

Your Current Organism:

Takifugu rubripes

NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSTRUP00000038486	GRIK2	ENSTRUP00000038486	ENSTRUP00000058044	annotation not available	Glutamate ionotropic receptor kainate type subunit 2.	0.471
ENSTRUP00000038486	GRIK2-2	ENSTRUP00000038486	ENSTRUP00000085198	annotation not available	Glutamate ionotropic receptor kainate type subunit 2.	0.471
ENSTRUP00000038486	GRIK3	ENSTRUP00000038486	ENSTRUP00000087857	annotation not available	Glutamate ionotropic receptor kainate type subunit 3.	0.471
ENSTRUP00000038486	GRIK5	ENSTRUP00000038486	ENSTRUP00000012654	annotation not available	Glutamate ionotropic receptor kainate type subunit 5.	0.471
ENSTRUP00000038486	LOC101061845	ENSTRUP00000038486	ENSTRUP00000087389	annotation not available	NME/NM23 family member 8; Belongs to the NDK family.	0.686
ENSTRUP00000038486	LOC101073376	ENSTRUP00000038486	ENSTRUP00000038242	annotation not available	Glutamate receptor, ionotropic, kainate 1b.	0.471
ENSTRUP00000038486	LOC101075174	ENSTRUP00000038486	ENSTRUP00000062232	annotation not available	Glutamate ionotropic receptor kainate type subunit 2.	0.471
ENSTRUP00000038486	LOC101079464	ENSTRUP00000038486	ENSTRUP00000067280	annotation not available	Glutamate receptor, ionotropic, kainate 1a.	0.471
ENSTRUP00000038486	ak9	ENSTRUP00000038486	ENSTRUP00000079788	annotation not available	Adenylate kinase 9.	0.999
GRIK2	ENSTRUP00000038486	ENSTRUP00000058044	ENSTRUP00000038486	Glutamate ionotropic receptor kainate type subunit 2.	annotation not available	0.471
GRIK2	GRIK5	ENSTRUP00000058044	ENSTRUP00000012654	Glutamate ionotropic receptor kainate type subunit 2.	Glutamate ionotropic receptor kainate type subunit 5.	0.554
GRIK2	LOC101061845	ENSTRUP00000058044	ENSTRUP00000087389	Glutamate ionotropic receptor kainate type subunit 2.	NME/NM23 family member 8; Belongs to the NDK family.	0.524
GRIK2	ak9	ENSTRUP00000058044	ENSTRUP00000079788	Glutamate ionotropic receptor kainate type subunit 2.	Adenylate kinase 9.	0.761
GRIK2-2	ENSTRUP00000038486	ENSTRUP00000085198	ENSTRUP00000038486	Glutamate ionotropic receptor kainate type subunit 2.	annotation not available	0.471
GRIK2-2	GRIK5	ENSTRUP00000085198	ENSTRUP00000012654	Glutamate ionotropic receptor kainate type subunit 2.	Glutamate ionotropic receptor kainate type subunit 5.	0.554
GRIK2-2	LOC101061845	ENSTRUP00000085198	ENSTRUP00000087389	Glutamate ionotropic receptor kainate type subunit 2.	NME/NM23 family member 8; Belongs to the NDK family.	0.524
GRIK2-2	ak9	ENSTRUP00000085198	ENSTRUP00000079788	Glutamate ionotropic receptor kainate type subunit 2.	Adenylate kinase 9.	0.761
GRIK3	ENSTRUP00000038486	ENSTRUP00000087857	ENSTRUP00000038486	Glutamate ionotropic receptor kainate type subunit 3.	annotation not available	0.471
GRIK3	GRIK5	ENSTRUP00000087857	ENSTRUP00000012654	Glutamate ionotropic receptor kainate type subunit 3.	Glutamate ionotropic receptor kainate type subunit 5.	0.554
GRIK3	LOC101061845	ENSTRUP00000087857	ENSTRUP00000087389	Glutamate ionotropic receptor kainate type subunit 3.	NME/NM23 family member 8; Belongs to the NDK family.	0.524