STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC101071235Lysine (K)-specific demethylase 2Ba. (780 aa)    
Predicted Functional Partners:
skp1
S-phase kinase-associated protein 1; Belongs to the SKP1 family.
    
 0.959
rnf2
Ring finger protein 2.
    
 
 0.875
cul3
Cullin 3a; Belongs to the cullin family.
    
 0.864
cacul1
Cullin domain-containing protein; Belongs to the cullin family.
    
 0.864
rnf7
Ring finger protein 7.
    
 0.821
LOC115248454
RING-box protein 1.
    
 0.821
LOC101079814
Ring-box 1, E3 ubiquitin protein ligase.
    
 0.821
kdm7a
Lysine (K)-specific demethylase 7Ab.
 
 
 0.805
rybp
RING1 and YY1 binding protein b.
    
 
 0.785
LOC101070310
YY1 associated factor 2.
    
 
 0.785
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.