Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ccr6Chemokine (C-C motif) receptor 6; Belongs to the G-protein coupled receptor 1 family. (368 aa)    
Predicted Functional Partners:
ccl20
C-C motif chemokine ligand 20.
     
 0.943
LOC101071844
SCY domain-containing protein.
    
  0.906
il1r2
Uncharacterized protein.
     
 0.613
il10
Interleukin 10.
     
 0.562
LOC101072499
Uncharacterized protein.
     
 0.543
cd4
T-cell surface glycoprotein CD4.
   
 
 0.534
ccl19
SCY domain-containing protein.
   
 0.514
LOC105417509
Interleukin-17A/F-3.
      
 0.484
LOC101065739
Chemokine (C-X-C motif) ligand 12a (stromal cell-derived factor 1).
    
 0.478
cxcl12
Chemokine (C-X-C motif) ligand 12b (stromal cell-derived factor 1); Belongs to the intercrine alpha (chemokine CxC) family.
    
 0.478
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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