Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
dtwd2DTW domain containing 2. (288 aa)    
Predicted Functional Partners:
dtwd1
DTW domain containing 1.
      
 0.845
tsr3
Probable ribosome biogenesis protein tsr3; Probable pre-rRNA processing protein involved in ribosome biogenesis.
      
 0.835
dus2
Dihydrouridine synthase 2.
   
  
 0.823
dus4l
tRNA-dihydrouridine synthase; Catalyzes the synthesis of dihydrouridine, a modified base found in the D-loop of most tRNAs; Belongs to the dus family.
   
  
 0.627
eipr1
EARP complex and GARP complex interacting protein 1.
      
 0.600
trmt1
tRNA (guanine(26)-N(2))-dimethyltransferase.
      
 0.585
LOC101073398
Uncharacterized protein.
      
 0.578
brix1
Brix domain containing 2.
   
  
 0.533
msl1
MSL complex subunit 1b.
      
 0.514
vezt
Vezatin, adherens junctions transmembrane protein.
      
 0.513
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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