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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC115247556Stromal cell-derived factor 2-like 1. (218 aa)    
Predicted Functional Partners:
dnajb11
DnaJ heat shock protein family (Hsp40) member B11.
   
 
 0.696
dnajc10
DnaJ (Hsp40) homolog, subfamily C, member 10.
   
 
 0.691
hsp90b1
Heat shock protein 90, beta (grp94), member 1.
   
 
 0.572
LOC101078584
Dystroglycan 1.
    
 0.548
LOC101073584
Peptidase S72 domain-containing protein.
    
 0.548
creld2
Cysteine-rich with EGF-like domains 2.
   
 
 0.525
cdc42se2
CDC42 small effector 2.
   
 
 0.496
snx5
Sorting nexin; Involved in several stages of intracellular trafficking.
   
 
 0.485
snx6
Sorting nexin; Involved in several stages of intracellular trafficking.
   
 
 0.485
ddost
Dolichyl-diphosphooligosaccharide--protein glycosyltransferase 48 kDa subunit; Subunit of the oligosaccharyl transferase (OST) complex that catalyzes the initial transfer of a defined glycan (Glc(3)Man(9)GlcNAc(2) in eukaryotes) from the lipid carrier dolichol- pyrophosphate to an asparagine residue within an Asn-X-Ser/Thr consensus motif in nascent polypeptide chains, the first step in protein N-glycosylation. N-glycosylation occurs cotranslationally and the complex associates with the Sec61 complex at the channel-forming translocon complex that mediates protein translocation across t [...]
   
 
 0.476
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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