Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC101075481Fibromodulin a. (350 aa)    
Predicted Functional Partners:
tgf-beta1
Transforming growth factor beta; Belongs to the TGF-beta family.
    
 0.942
LOC101077955
Transforming growth factor beta; Belongs to the TGF-beta family.
   
 0.928
tgfb3
Transforming growth factor beta; Belongs to the TGF-beta family.
   
 0.928
LOC101074584
Transforming growth factor beta; Belongs to the TGF-beta family.
    
 0.923
LOC101066787
Transforming growth factor beta; Belongs to the TGF-beta family.
    
 0.923
fmod
Fibromodulin b.
  
  
 
0.902
LOC101075903
Fin bud initiation factor a.
   
    0.855
fibin
Fin bud initiation factor b.
   
    0.855
lrr1
Zgc:77287.
  
   
 0.795
LOC101078700
Aggrecan a.
    
 0.703
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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