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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101075481Fibromodulin a. (350 aa)    
Predicted Functional Partners:
tgf-beta1
Transforming growth factor beta; Belongs to the TGF-beta family.
    
 0.937
LOC101077955
Transforming growth factor beta; Belongs to the TGF-beta family.
   
 0.922
tgfb3
Transforming growth factor beta; Belongs to the TGF-beta family.
   
 0.922
LOC101074584
Transforming growth factor beta; Belongs to the TGF-beta family.
    
 0.915
LOC101066787
Transforming growth factor beta; Belongs to the TGF-beta family.
    
 0.915
lum
Lumican.
  
 
0.791
lrr1
Zgc:77287.
  
   
 0.709
LOC115246761
Asporin.
  
 
0.694
bgn
Biglycan; May be involved in collagen fiber assembly. Belongs to the small leucine-rich proteoglycan (SLRP) family. SLRP class I subfamily.
  
 
0.688
LOC101063377
Decorin; May affect the rate of fibrils formation.
  
  
0.628
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.