STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
H2SKD3_TAKRUSCY domain-containing protein. (90 aa)    
Predicted Functional Partners:
cxcl13
CXC motif chemokine ligand 13.
   
 0.708
IL-8
Interleukin-8; Belongs to the intercrine alpha (chemokine CxC) family.
   
 0.672
LOC101064358
Chemokine (C-C motif) ligand 25a.
    
 0.665
LOC101061975
Chemokine (C-C motif) ligand 25b.
    
 0.665
LOC101065739
Chemokine (C-X-C motif) ligand 12a (stromal cell-derived factor 1).
   
 0.569
cxcl12
Chemokine (C-X-C motif) ligand 12b (stromal cell-derived factor 1); Belongs to the intercrine alpha (chemokine CxC) family.
   
 0.569
il10
Interleukin 10.
   
 
 0.545
cxcl14
Chemokine (C-X-C motif) ligand 14.
    
 
 0.539
LOC105418180
Chemokine (C-X-C motif) ligand 19.
    
 0.473
ackr4
Atypical chemokine receptor 4b; Belongs to the G-protein coupled receptor 1 family.
   
 0.449
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.