Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
smpxSmall muscle protein X-linked. (103 aa)    
Predicted Functional Partners:
csrp3
Cysteine and glycine-rich protein 3 (cardiac LIM protein).
   
  
 0.835
tspear
Thrombospondin-type laminin G domain and EAR repeat-containing protein.
      
 0.720
LOC101073019
Myozenin 2b.
   
  
 0.718
H2TAS4_TAKRU
Myozenin 2a.
   
  
 0.718
gpsm2
Uncharacterized protein.
      
 0.698
LOC101076743
Phosphoribosyl pyrophosphate synthetase 1B.
      
 0.695
LOC101066493
Phosphoribosyl pyrophosphate synthetase 2.
      
 0.695
hsd17b4
Hydroxysteroid (17-beta) dehydrogenase 4.
      
 0.612
TMEM43
Uncharacterized protein.
      
 0.595
dnmt1
DNA (cytosine-5)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family.
      
 0.580
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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