STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
lrrc40Leucine rich repeat containing 40. (597 aa)    
Predicted Functional Partners:
LOC101076806
Canopy FGF signaling regulator 3.
    
 0.958
mri1
Methylthioribose-1-phosphate isomerase; Catalyzes the interconversion of methylthioribose-1-phosphate (MTR-1-P) into methylthioribulose-1-phosphate (MTRu-1-P). Belongs to the eIF-2B alpha/beta/delta subunits family. MtnA subfamily.
    
   0.885
cnpy4
Canopy FGF signaling regulator 4.
    
 0.833
kctd3
BTB domain-containing protein.
    
  0.809
smim12
Small integral membrane protein 12.
   
 
 0.778
H2V0R2_TAKRU
Calponin-homology (CH) domain-containing protein.
    
 0.728
wls
Wnt ligand secretion mediator.
      
 0.723
tcaim
T cell activation inhibitor, mitochondrial.
   
  
 0.707
bend7
Si:ch211-220f12.4.
      
 0.702
snapc3
Small nuclear RNA activating complex, polypeptide 3.
      
 0.700
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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