STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
lrrn3Leucine rich repeat neuronal 3b. (708 aa)    
Predicted Functional Partners:
LOC101072798
Si:zfos-323e3.4.
  
     0.447
lrrc8d
Leucine rich repeat containing 8 VRAC subunit Da.
  
     0.439
H2S799_TAKRU
Uncharacterized protein.
  
     0.430
ENSTRUP00000075313
annotation not available
  
     0.430
vps26a
VPS26, retromer complex component A.
      
 0.426
LOC101066902
Leucine rich repeat containing 8 VRAC subunit Db.
  
     0.421
alg6
Alpha-1,3-glucosyltransferase; Belongs to the ALG6/ALG8 glucosyltransferase family.
      
 0.419
LRRC30
Leucine rich repeat containing 30.
  
     0.414
lrrc1
Leucine rich repeat containing 1.
  
   
 0.400
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.