Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
cgnCingulin a. (1205 aa)    
Predicted Functional Partners:
H2U479_TAKRU
Rho/rac guanine nucleotide exchange factor (GEF) 18b.
     
 0.950
arhgef2
Uncharacterized protein.
     
 0.942
ARHGEF2
Rho guanine nucleotide exchange factor 2-like.
     
 0.942
LOC101061451
Rho/rac guanine nucleotide exchange factor (GEF) 18a.
     
  0.937
LOC101073904
Tight junction protein 1b; Belongs to the MAGUK family.
   
 
 0.926
LOC101069449
Tight junction protein 1a; Belongs to the MAGUK family.
   
 
 0.926
LOC101075973
Cingulin b.
  
  
 
0.902
gata4
GATA binding protein 4.
     
  0.900
f11r
F11 receptor, tandem duplicate 1.
     
 0.717
LOC105418538
Partitioning defective 6 homolog alpha-like isoform X1.
   
 
 0.579
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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