STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101076974Tripartite motif containing 47. (505 aa)    
Predicted Functional Partners:
trim37
Tripartite motif containing 37.
    
 
 0.501
trim44
Tripartite motif containing 44.
    
 
 0.501
LOC101073294
Tripartite motif containing 46a.
      
 0.469
ube2i
Ubiquitin-conjugating enzyme E2Ia; Belongs to the ubiquitin-conjugating enzyme family.
    
 0.460
RNF207
Ring finger protein 207.
      
 0.439
LOC101077561
Filamin C, gamma a (actin binding protein 280).
    
 0.436
DDX41
DEAD-box helicase 41.
    
 0.434
LOC101068299
Protein S100; Belongs to the S-100 family.
    
 0.407
rps27a
Ribosomal protein S27a.
    
  0.404
nup155
Nucleoporin 153.
    
 0.403
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.