Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PUF60Poly-U binding splicing factor b. (551 aa)    
Predicted Functional Partners:
sf3a2
Splicing factor 3a, subunit 2.
   
 0.950
LOC101062720
Uncharacterized protein.
  
  
 
0.901
sf3b1
Splicing factor 3b, subunit 1.
   
 0.877
sap30bp
SAP30 binding protein.
   
   0.875
LOC101069147
Splicing factor 3a, subunit 3.
   
 0.875
snrpf
Small nuclear ribonucleoprotein polypeptide F.
   
 0.841
LOC101066976
Cwf21 domain-containing protein.
   
 
 0.838
fubp1
Far upstream element (FUSE) binding protein 1.
   
 
 0.835
ENSTRUP00000080815
KH-type splicing regulatory protein.
   
 
 0.824
Sf1
Splicing factor 1.
   
 0.816
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.