LOC101066245 protein (Takifugu rubripes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

LOC101066245

Uncharacterized protein. (552 aa)

Predicted Functional Partners:

serpine1

0.930

serpine2

0.867

plg

0.773

serpinf2

0.687

LOC101068194

0.687

pdgfc

0.645

LOC101064288

0.609

LOC101061350

0.609

anxa1

0.609

LOC101065219

0.602

Your Current Organism:

Takifugu rubripes

NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC101061350	LOC101064288	ENSTRUP00000063021	ENSTRUP00000005369	Annexin.	Annexin.	0.901
LOC101061350	LOC101065219	ENSTRUP00000063021	ENSTRUP00000028045	Annexin.	Protein S100; Belongs to the S-100 family.	0.986
LOC101061350	LOC101066245	ENSTRUP00000063021	ENSTRUP00000013103	Annexin.	Uncharacterized protein.	0.609
LOC101061350	plg	ENSTRUP00000063021	ENSTRUP00000021511	Annexin.	Uncharacterized protein; Belongs to the peptidase S1 family.	0.597
LOC101064288	LOC101061350	ENSTRUP00000005369	ENSTRUP00000063021	Annexin.	Annexin.	0.901
LOC101064288	LOC101065219	ENSTRUP00000005369	ENSTRUP00000028045	Annexin.	Protein S100; Belongs to the S-100 family.	0.986
LOC101064288	LOC101066245	ENSTRUP00000005369	ENSTRUP00000013103	Annexin.	Uncharacterized protein.	0.609
LOC101064288	plg	ENSTRUP00000005369	ENSTRUP00000021511	Annexin.	Uncharacterized protein; Belongs to the peptidase S1 family.	0.597
LOC101065219	LOC101061350	ENSTRUP00000028045	ENSTRUP00000063021	Protein S100; Belongs to the S-100 family.	Annexin.	0.986
LOC101065219	LOC101064288	ENSTRUP00000028045	ENSTRUP00000005369	Protein S100; Belongs to the S-100 family.	Annexin.	0.986
LOC101065219	LOC101066245	ENSTRUP00000028045	ENSTRUP00000013103	Protein S100; Belongs to the S-100 family.	Uncharacterized protein.	0.602
LOC101065219	anxa1	ENSTRUP00000028045	ENSTRUP00000069555	Protein S100; Belongs to the S-100 family.	Annexin.	0.934
LOC101065219	plg	ENSTRUP00000028045	ENSTRUP00000021511	Protein S100; Belongs to the S-100 family.	Uncharacterized protein; Belongs to the peptidase S1 family.	0.699
LOC101066245	LOC101061350	ENSTRUP00000013103	ENSTRUP00000063021	Uncharacterized protein.	Annexin.	0.609
LOC101066245	LOC101064288	ENSTRUP00000013103	ENSTRUP00000005369	Uncharacterized protein.	Annexin.	0.609
LOC101066245	LOC101065219	ENSTRUP00000013103	ENSTRUP00000028045	Uncharacterized protein.	Protein S100; Belongs to the S-100 family.	0.602
LOC101066245	LOC101068194	ENSTRUP00000013103	ENSTRUP00000086412	Uncharacterized protein.	SERPIN domain-containing protein; Belongs to the serpin family.	0.687
LOC101066245	anxa1	ENSTRUP00000013103	ENSTRUP00000069555	Uncharacterized protein.	Annexin.	0.609
LOC101066245	pdgfc	ENSTRUP00000013103	ENSTRUP00000040626	Uncharacterized protein.	Platelet derived growth factor c; Belongs to the PDGF/VEGF growth factor family.	0.645
LOC101066245	plg	ENSTRUP00000013103	ENSTRUP00000021511	Uncharacterized protein.	Uncharacterized protein; Belongs to the peptidase S1 family.	0.773