Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ubxn2aUBX domain protein 2A. (245 aa)    
Predicted Functional Partners:
vcp
Valosin containing protein; Belongs to the AAA ATPase family.
   
 0.997
ubxn6
UBX domain protein 6.
    
 0.996
nsfl1c
NSFL1 (p97) cofactor (p47).
  
 
 
0.986
ubxn1
UBX domain protein 1.
   
 0.979
aspscr1
ASPSCR1 tether for SLC2A4, UBX domain containing.
    
 
 0.976
svip
Si:ch73-147o17.1.
     
 0.969
UBXN4
UBX domain protein 4.
    
 0.950
lactb
Lactamase beta.
    
  0.949
ubxn7
UBX domain protein 7.
   
 
 0.911
UBXN7
UBX domain protein 7.
   
 
 0.911
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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