STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC101068797Homeobox domain-containing protein. (329 aa)    
Predicted Functional Partners:
C1orf146
Chromosome 1 open reading frame 146.
      
 0.592
ptf1a
Pancreas associated transcription factor 1a.
      
 0.557
hes3
Hairy and enhancer of split 3.
    
 
 0.457
SP3
Sp3a transcription factor.
    
 
 0.456
Gap43
Neuromodulin_N domain-containing protein.
   
  
 0.442
meis2
Meis homeobox 2a.
    
 
 0.421
etv5
ETS domain-containing protein.
    
 
 0.413
lhx2
LIM homeobox 2b.
   
 0.407
foxn4
Forkhead box N4.
   
 0.404
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.