LOC101065208 protein (Takifugu rubripes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

LOC101065208

Usher syndrome 1C. (557 aa)

Predicted Functional Partners:

H2V7V0_TAKRU

0.978

LOC101077248

0.967

LOC101065727

0.955

LOC101077154

0.943

anks4b

0.943

cdhr2

0.928

Adgrv1

0.892

gpr84

0.882

sall4

0.877

brca2

0.873

Your Current Organism:

Takifugu rubripes

NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Adgrv1	H2V7V0_TAKRU	ENSTRUP00000002476	ENSTRUP00000045289	Uncharacterized protein.	Uncharacterized protein.	0.738
Adgrv1	LOC101065208	ENSTRUP00000002476	ENSTRUP00000013547	Uncharacterized protein.	Usher syndrome 1C.	0.892
Adgrv1	LOC101065727	ENSTRUP00000002476	ENSTRUP00000022551	Uncharacterized protein.	Protocadherin-related 15b.	0.510
Adgrv1	LOC101077154	ENSTRUP00000002476	ENSTRUP00000011813	Uncharacterized protein.	Usher syndrome 1Gb (autosomal recessive).	0.521
Adgrv1	LOC101077248	ENSTRUP00000002476	ENSTRUP00000031108	Uncharacterized protein.	Usher syndrome 1Ga (autosomal recessive).	0.521
Adgrv1	anks4b	ENSTRUP00000002476	ENSTRUP00000041202	Uncharacterized protein.	Ankyrin repeat and sterile alpha motif domain containing 4B.	0.477
Adgrv1	cdhr2	ENSTRUP00000002476	ENSTRUP00000080964	Uncharacterized protein.	Cadherin-related family member 2.	0.545
H2V7V0_TAKRU	Adgrv1	ENSTRUP00000045289	ENSTRUP00000002476	Uncharacterized protein.	Uncharacterized protein.	0.738
H2V7V0_TAKRU	LOC101065208	ENSTRUP00000045289	ENSTRUP00000013547	Uncharacterized protein.	Usher syndrome 1C.	0.978
H2V7V0_TAKRU	LOC101065727	ENSTRUP00000045289	ENSTRUP00000022551	Uncharacterized protein.	Protocadherin-related 15b.	0.929
H2V7V0_TAKRU	LOC101077154	ENSTRUP00000045289	ENSTRUP00000011813	Uncharacterized protein.	Usher syndrome 1Gb (autosomal recessive).	0.637
H2V7V0_TAKRU	LOC101077248	ENSTRUP00000045289	ENSTRUP00000031108	Uncharacterized protein.	Usher syndrome 1Ga (autosomal recessive).	0.637
H2V7V0_TAKRU	anks4b	ENSTRUP00000045289	ENSTRUP00000041202	Uncharacterized protein.	Ankyrin repeat and sterile alpha motif domain containing 4B.	0.504
LOC101065208	Adgrv1	ENSTRUP00000013547	ENSTRUP00000002476	Usher syndrome 1C.	Uncharacterized protein.	0.892
LOC101065208	H2V7V0_TAKRU	ENSTRUP00000013547	ENSTRUP00000045289	Usher syndrome 1C.	Uncharacterized protein.	0.978
LOC101065208	LOC101065727	ENSTRUP00000013547	ENSTRUP00000022551	Usher syndrome 1C.	Protocadherin-related 15b.	0.955
LOC101065208	LOC101077154	ENSTRUP00000013547	ENSTRUP00000011813	Usher syndrome 1C.	Usher syndrome 1Gb (autosomal recessive).	0.943
LOC101065208	LOC101077248	ENSTRUP00000013547	ENSTRUP00000031108	Usher syndrome 1C.	Usher syndrome 1Ga (autosomal recessive).	0.967
LOC101065208	anks4b	ENSTRUP00000013547	ENSTRUP00000041202	Usher syndrome 1C.	Ankyrin repeat and sterile alpha motif domain containing 4B.	0.943
LOC101065208	brca2	ENSTRUP00000013547	ENSTRUP00000015030	Usher syndrome 1C.	BRCA2 DNA repair associated.	0.873