Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ccnb3Cyclin B3; Belongs to the cyclin family. (452 aa)    
Predicted Functional Partners:
LOC101064374
Cyclin-dependent kinase 1; Belongs to the protein kinase superfamily.
   
 0.985
plk3
Serine/threonine-protein kinase PLK.
   
 0.950
LOC101063766
Uncharacterized protein.
   
  
 0.890
FZR1
Fizzy/cell division cycle 20 related 1a.
   
 0.865
cdk4
Cyclin-dependent kinase 4; Belongs to the protein kinase superfamily.
   
 0.864
ENSTRUP00000085951
annotation not available
   
 0.860
ccna2
Cyclin A2; Belongs to the cyclin family.
   
 0.854
ccna1
Cyclin-A1 isoform X1.
   
 0.854
LOC101063487
Cell division cycle 20 homolog.
   
 0.851
ENSTRUP00000069968
annotation not available
   
 0.851
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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