Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
tnrc18Trinucleotide repeat containing 18. (2946 aa)    
Predicted Functional Partners:
sinhcaf
SIN3-HDAC complex associated factor.
    
 
 0.878
sap30l
Sap30-like.
    
 
 0.686
LOC101074870
SIN3-HDAC complex associated factor, like.
    
 
 0.681
sin3a
SIN3 transcription regulator family member Aa.
   
 0.644
LOC101075468
SIN3 transcription regulator family member Ab.
   
 0.644
sin3b
SIN3 transcription regulator family member B.
   
 0.644
dnpep
Aspartyl aminopeptidase; Belongs to the peptidase M18 family.
    
 
 0.595
ing1
Inhibitor of growth protein.
    
  0.590
mrpl15
Mitochondrial ribosomal protein L15.
    
 
 0.571
mrpl54
Mitochondrial ribosomal protein L54.
      
 0.561
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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