STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
bhlhe41Basic helix-loop-helix family, member e41. (427 aa)    
Predicted Functional Partners:
LOC101065307
Neuronal PAS domain protein 2.
    
 0.803
CLOCK
Clock circadian regulator a.
    
 0.803
LOC101078879
Clock circadian regulator b.
    
 0.803
fbxw11
F-box and WD repeat domain containing 11b.
    
 
 0.749
LOC101078561
Period circadian clock 3.
    
 0.697
PER2
Period circadian regulator 2.
    
 0.697
per1
Period circadian clock 1b.
    
 0.697
ENSTRUP00000063599
Uncharacterized protein.
    
 0.697
LOC101061913
Period circadian clock 2.
    
 0.697
ENSTRUP00000025250
annotation not available
    
 
 0.687
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.