Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
cwf19l1CWF19 like cell cycle control factor 1. (556 aa)    
Predicted Functional Partners:
xab2
XPA binding protein 2.
    
 0.978
tfip11
Tuftelin-interacting protein 11; Involved in pre-mRNA splicing, specifically in spliceosome disassembly during late-stage splicing events. Belongs to the TFP11/STIP family.
   
 0.946
syf2
SYF2 pre-mRNA-splicing factor.
    
  0.945
cwf19l2
CWF19 like cell cycle control factor 2.
    
0.945
prpf8
Pre-mRNA processing factor 8.
    
 
 0.942
crnkl1
Crooked neck pre-mRNA splicing factor 1.
   
 0.930
ccdc12
Coiled-coil domain containing 12.
    
  0.923
dbr1
Debranching RNA lariats 1.
   
 
 0.907
rbm22
RNA binding motif protein 22.
   
 
 0.875
prpf19
Pre-mRNA processing factor 19.
   
 
 0.853
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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