Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
LOC101063572Leucine rich repeat containing 4Ba. (731 aa)    
Predicted Functional Partners:
LOC101063084
Protein tyrosine phosphatase receptor type Fa.
    
 0.957
LOC101075629
Protein tyrosine phosphatase receptor type Fb.
    
 0.957
LOC101064610
Leucine rich repeat containing 4Bb.
  
  
 
0.901
ntng1
Netrin g1a.
   
 0.547
H2U447_TAKRU
Vav 3 guanine nucleotide exchange factor b.
   
 0.547
ENSTRUP00000008647
Receptor-type tyrosine-protein phosphatase S-like isoform X1.
    
 0.467
LOC101067188
Protein tyrosine phosphatase receptor type Sa.
    
 0.467
ENSTRUP00000071898
Uncharacterized protein.
    
 0.467
ENSTRUP00000078624
Uncharacterized protein.
    
 0.467
PTPRD
Receptor-type tyrosine-protein phosphatase delta isoform X1.
    
 0.467
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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