LOC101061216 protein (Takifugu rubripes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

LOC101061216

PID domain-containing protein. (730 aa)

Predicted Functional Partners:

nkap

0.846

DDX41

0.810

pnn

0.779

ENSTRUP00000003800

0.719

lpp

0.719

fblim1

0.719

haus4

0.719

LIMD1

0.719

wtip

0.719

LOC105416730

0.719

Your Current Organism:

Takifugu rubripes

NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DDX41	LOC101061216	ENSTRUP00000050359	ENSTRUP00000013869	DEAD-box helicase 41.	PID domain-containing protein.	0.810
DDX41	nkap	ENSTRUP00000050359	ENSTRUP00000026733	DEAD-box helicase 41.	NFKB activating protein.	0.956
DDX41	pnn	ENSTRUP00000050359	ENSTRUP00000082108	DEAD-box helicase 41.	Pinin, desmosome associated protein.	0.683
ENSTRUP00000003800	LOC101061216	ENSTRUP00000003800	ENSTRUP00000013869	Zyxin.	PID domain-containing protein.	0.719
LIMD1	LOC101061216	ENSTRUP00000054767	ENSTRUP00000013869	LIM domains containing 1.	PID domain-containing protein.	0.719
LIMD1	lpp	ENSTRUP00000054767	ENSTRUP00000006248	LIM domains containing 1.	LIM domain containing preferred translocation partner in lipoma.	0.525
LOC101061216	DDX41	ENSTRUP00000013869	ENSTRUP00000050359	PID domain-containing protein.	DEAD-box helicase 41.	0.810
LOC101061216	ENSTRUP00000003800	ENSTRUP00000013869	ENSTRUP00000003800	PID domain-containing protein.	Zyxin.	0.719
LOC101061216	LIMD1	ENSTRUP00000013869	ENSTRUP00000054767	PID domain-containing protein.	LIM domains containing 1.	0.719
LOC101061216	LOC105416730	ENSTRUP00000013869	ENSTRUP00000065231	PID domain-containing protein.	Zyxin.	0.719
LOC101061216	fblim1	ENSTRUP00000013869	ENSTRUP00000027859	PID domain-containing protein.	Filamin binding LIM protein 1.	0.719
LOC101061216	haus4	ENSTRUP00000013869	ENSTRUP00000027913	PID domain-containing protein.	HAUS augmin-like complex, subunit 4.	0.719
LOC101061216	lpp	ENSTRUP00000013869	ENSTRUP00000006248	PID domain-containing protein.	LIM domain containing preferred translocation partner in lipoma.	0.719
LOC101061216	nkap	ENSTRUP00000013869	ENSTRUP00000026733	PID domain-containing protein.	NFKB activating protein.	0.846
LOC101061216	pnn	ENSTRUP00000013869	ENSTRUP00000082108	PID domain-containing protein.	Pinin, desmosome associated protein.	0.779
LOC101061216	wtip	ENSTRUP00000013869	ENSTRUP00000055890	PID domain-containing protein.	WT1 interacting protein.	0.719
LOC105416730	LOC101061216	ENSTRUP00000065231	ENSTRUP00000013869	Zyxin.	PID domain-containing protein.	0.719
fblim1	LOC101061216	ENSTRUP00000027859	ENSTRUP00000013869	Filamin binding LIM protein 1.	PID domain-containing protein.	0.719
haus4	LOC101061216	ENSTRUP00000027913	ENSTRUP00000013869	HAUS augmin-like complex, subunit 4.	PID domain-containing protein.	0.719
lpp	LIMD1	ENSTRUP00000006248	ENSTRUP00000054767	LIM domain containing preferred translocation partner in lipoma.	LIM domains containing 1.	0.525