STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pdlim5PDZ and LIM domain 5a. (450 aa)    
Predicted Functional Partners:
LOC101075286
Actinin, alpha 1.
   
 
 0.692
ACTN4
Actinin alpha 4.
   
 
 0.665
vcl
Vinculin b.
   
 0.621
LOC101071113
Vinculin a.
   
 0.621
TPM1
Tropomyoshin1-1; Belongs to the tropomyosin family.
   
 0.602
ctnnal1
Catenin (cadherin-associated protein), alpha-like 1.
   
 0.597
ctnna1
Catenin (cadherin-associated protein), alpha 1.
   
 0.597
ctnna2
Catenin (cadherin-associated protein), alpha 2.
   
 0.597
actn3
Actinin alpha 3b.
   
 
 0.580
H2UZP7_TAKRU
Parvin, gamma.
   
 0.579
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.