Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
tbx19Uncharacterized protein. (428 aa)    
Predicted Functional Partners:
mixl1
Mix paired-like homeobox.
   
 0.760
LOC101069727
Notochord homeobox.
    
 0.675
LOC105417863
Uncharacterized protein.
      
 0.606
LOC101074260
POU domain protein.
   
 0.599
foxa1
Forkhead box A1.
    
 0.579
LOC101070183
Forkhead box A2.
    
 0.579
H2US63_TAKRU
Fork-head domain-containing protein.
    
 0.579
pou1f1
POU domain protein.
   
 0.571
LOC101068612
Forkhead box H1.
   
 
 0.568
snai2
Snail family zinc finger 2.
    
 0.562
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
Server load: low (36%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.