STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101073729Ataxin 3. (223 aa)    
Predicted Functional Partners:
prkn
Ubiquitin-like domain-containing protein.
    
 0.976
vcp
Valosin containing protein; Belongs to the AAA ATPase family.
   
 0.952
spata5l1
Spermatogenesis associated 5-like 1.
   
 0.898
SPATA5
ATPase family protein 2 homolog.
   
 0.898
rps27a
Ribosomal protein S27a.
    
 0.891
RAD23B
RAD23 homolog B, nucleotide excision repair protein.
    
 0.855
rad23a
RAD23 homolog A, nucleotide excision repair protein a.
    
 0.855
uba52
Ubiquitin A-52 residue ribosomal protein fusion product 1.
    
  0.846
stub1
STIP1 homology and U-Box containing protein 1.
    
 
 0.779
KATNAL2
Katanin catalytic subunit A1 like 2; Belongs to the AAA ATPase family.
   
 0.750
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.