Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
rb1cc1RB1-inducible coiled-coil 1. (1586 aa)    
Predicted Functional Partners:
atg101
Autophagy related 101.
   
 0.999
atg13
Autophagy-related protein 13; Belongs to the ATG13 family. Metazoan subfamily.
    
 0.999
atg14
Autophagy related 14.
   
 0.994
LOC101076837
Unc-51 like autophagy activating kinase 1a.
   
 0.993
ulk2
Unc-51 like autophagy activating kinase 2.
   
 0.993
ulk1
Serine/threonine-protein kinase ULK1 isoform X1.
   
 0.993
becn1
Beclin 1.
    
 0.978
c9orf72
Zgc:100846.
    
 0.975
atg5
Autophagy protein 5; Involved in autophagic vesicle formation.
    
 
 0.961
atg12
Ubiquitin-like protein ATG12; Ubiquitin-like protein involved in autophagic vesicle formation; Belongs to the ATG12 family.
    
 
 0.958
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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