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The next version of STRING is ready for use in your analyses: updated networks across STRING newly available directed regulatory networks a new typed view showing functional, physical, and regulatory edges in one network new clustering options and cluster-based layouts … and much more!
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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
H2SNP3_TAKRUUncharacterized protein. (116 aa)    
Predicted Functional Partners:
ENSTRUP00000052013
Uncharacterized protein.
 
   
  0.933
ENSTRUP00000060440
annotation not available
 
      0.895
ash2l
Ash2 like, histone lysine methyltransferase complex subunit.
    
 0.865
LOC101074738
Retinoblastoma binding protein 5.
    
 0.855
wdr5
WD repeat domain 5.
   
 0.760
kdm6a
Lysine (K)-specific demethylase 6A, like.
   
 0.657
dpy30
Dpy-30 histone methyltransferase complex regulatory subunit.
   
 0.648
wsb1
WD repeat and SOCS box-containing protein 1; Probable substrate-recognition component of a SCF-like ECS (Elongin-Cullin-SOCS-box protein) E3 ubiquitin-protein ligase complex which mediates the ubiquitination and subsequent proteasomal degradation of target proteins.
   
 0.637
wsb2
WD repeat and SOCS box containing 2.
   
 0.637
ENSTRUP00000067601
annotation not available
   
 0.637
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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