Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
H2SNP3_TAKRUUncharacterized protein. (116 aa)    
Predicted Functional Partners:
ENSTRUP00000052013
Uncharacterized protein.
 
   
  0.951
ENSTRUP00000060440
annotation not available
 
   
  0.949
kdm6a
Lysine (K)-specific demethylase 6A, like.
   
 0.922
LOC101074738
Retinoblastoma binding protein 5.
    
 0.896
pagr1
PAXIP1 associated glutamate-rich protein 1.
    
 0.887
ash2l
Ash2 like, histone lysine methyltransferase complex subunit.
    
 0.876
LOC101078029
Uncharacterized protein.
   
 0.845
LOC101065748
Lysine (K)-specific demethylase 6B, a.
   
 0.845
ENSTRUP00000062730
Nucleic_acid_bd domain-containing protein.
   
 0.829
wdr5
WD repeat domain 5.
   
 0.798
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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