Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
LOC101077809Hydrolase_4 domain-containing protein. (305 aa)    
Predicted Functional Partners:
Armh1
Armadillo like helical domain containing 1.
      
 0.789
LOC101067776
Transmembrane protein 47-like.
      
 0.699
LOC101066916
Cylindromatosis (turban tumor syndrome), like.
      
 0.684
nexn
Nexilin.
      
 0.651
TMEM47
Transmembrane protein 47.
      
 0.650
fbxo21
F-box protein 21.
      
 0.640
ENSTRUP00000057454
Fibrosin-like 1.
      
 0.612
insl5
Relaxin family locus A type 1.
      
 0.551
lypla2
Lysophospholipase 2.
     
 0.545
lypla1
Lysophospholipase 1.
     
 0.545
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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