Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
itgb4Integrin beta. (1936 aa)    
Predicted Functional Partners:
LOC101069789
Integrin, alpha 6b; Belongs to the integrin alpha chain family.
   
 0.980
itga6
Integrin, alpha 6a; Belongs to the integrin alpha chain family.
   
 0.979
ENSTRUP00000058156
annotation not available
   
 0.972
LOC101062908
Protein tyrosine kinase 2ab; Belongs to the protein kinase superfamily. Tyr protein kinase family.
   
 0.962
PTK2
Protein tyrosine kinase 2; Belongs to the protein kinase superfamily. Tyr protein kinase family.
   
 0.962
lamb3
Uncharacterized protein.
   
 0.950
Tln1
Talin 1.
   
 0.939
ITGA7
Integrin subunit alpha 7; Belongs to the integrin alpha chain family.
   
 0.937
src
Tyrosine-protein kinase.
   
 0.933
LOC101065281
Tyrosine-protein kinase.
   
 0.933
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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