Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
bivmBasic, immunoglobulin-like variable motif containing. (490 aa)    
Predicted Functional Partners:
ercc3
Excision repair cross-complementation group 3.
   
 0.944
ercc6
Excision repair cross-complementation group 6.
   
 0.943
ercc2
Excision repair cross-complementation group 2.
   
 0.941
xpa
XPA_C domain-containing protein.
    
 0.932
ercc4
Excision repair cross-complementation group 4.
   
 0.921
ercc1
Excision repair cross-complementation group 1.
    
 0.900
gtf2h1
General transcription factor IIH, polypeptide 1.
    
 0.899
Fancm
ERCC4 domain-containing protein.
   
 0.898
LOC115247568
General transcription factor IIH subunit.
    
 0.873
xpc
Xeroderma pigmentosum, complementation group C.
   
 0.872
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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