STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC101073644Secreted phosphoprotein 1. (335 aa)    
Predicted Functional Partners:
LOC445896
Uncharacterized protein.
      
 0.705
cd44
Link domain-containing protein.
   
 
 0.640
scpp5
SCPP5.
    
 0.617
Fancm
ERCC4 domain-containing protein.
    
 0.615
mus81
MUS81 structure-specific endonuclease subunit.
    
 0.554
LOC101078973
Opsin 7, group member c; Belongs to the G-protein coupled receptor 1 family. Opsin subfamily.
     
 0.547
LOC101067510
G_PROTEIN_RECEP_F1_2 domain-containing protein.
     
 0.547
scpp1
SCPP1.
      
 0.541
lpar3
Lysophosphatidic acid receptor 3; Belongs to the G-protein coupled receptor 1 family.
     
 0.521
pold2
Polymerase (DNA directed), delta 2, regulatory subunit.
    
 0.504
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.