Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
sptssbSerine palmitoyltransferase, small subunit B. (80 aa)    
Predicted Functional Partners:
H2SB48_TAKRU
Serine palmitoyltransferase, small subunit A.
  
  
0.883
sptlc1
Serine palmitoyltransferase, long chain base subunit 1.
    
 0.843
LOC101069659
Serine palmitoyltransferase, long chain base subunit 2a.
    
 0.748
sptlc3
Serine palmitoyltransferase, long chain base subunit 3.
    
 0.748
sptlc2
Serine palmitoyltransferase, long chain base subunit 2b.
    
 0.748
ormdl1
ORM1-like protein; Negative regulator of sphingolipid synthesis.
      
 0.722
golga7
Golgin A7.
     
  0.540
LOC101076213
Golgin A7 family, member Ba.
     
  0.540
ism1
Isthmin 1.
    
 0.464
LOC101061656
Isthmin 2b.
    
 0.464
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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