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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
chdhCholine dehydrogenase. (627 aa)    
Predicted Functional Partners:
ift88
Intraflagellar transport 88 homolog.
    
 0.945
ift172
Uncharacterized protein.
    
 0.940
ift80
Intraflagellar transport 80 homolog (Chlamydomonas).
    
 0.936
cluap1
Clusterin associated protein 1.
    
 0.928
traf3ip1
TNF receptor-associated factor 3 interacting protein 1.
    
 0.921
ift52
Intraflagellar transport 52 homolog (Chlamydomonas).
    
 0.913
ENSTRUP00000053515
Uncharacterized protein.
    
 0.913
mboat1
Membrane bound O-acyltransferase domain containing 1; Belongs to the membrane-bound acyltransferase family.
   
 
 0.905
TTC26
Intraflagellar transport protein 56 isoform X1.
    
 0.902
LOC101076242
Uncharacterized protein.
    
 0.902
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.