STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
lratLecithin retinol acyltransferase a. (272 aa)    
Predicted Functional Partners:
LOC101062884
Si:ch1073-13h15.3.
     
 0.955
LOC101065125
Uncharacterized protein.
     
 0.955
LOC101063989
Cytochrome P450, family 26, subfamily A, polypeptide 1; Belongs to the cytochrome P450 family.
   
 
 0.948
rdh10
Retinol dehydrogenase 10a; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
   
 
 0.936
LOC101068771
Retinol dehydrogenase 20; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
   
 
 0.936
H2SJZ6_TAKRU
Uncharacterized protein.
   
 
 0.936
DGAT1
O-acyltransferase.
     
 0.935
LOC101062285
Retinoid isomerohydrolase RPE65 b.
     
 0.935
rpe65
Retinoid isomerohydrolase RPE65 a.
     
 0.935
LOC101072465
O-acyltransferase.
     
 0.935
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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