STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101064170IF rod domain-containing protein; Belongs to the intermediate filament family. (450 aa)    
Predicted Functional Partners:
pdc
Phosducin b.
   
  
 0.874
cplx4
Complexin 4a.
   
    0.672
grin1
Uncharacterized protein.
   
 0.523
LOC101074532
Glutamate receptor, ionotropic, N-methyl D-aspartate 1a.
   
 0.523
LOC101061760
Un-named hu7910.
   
 0.519
LOC101075329
Guanylate kinase 1b.
   
  0.506
LOC101070313
Ankyrin repeat domain 33Ab.
   
  0.476
LOC101063120
Ankyrin repeat domain 33Aa.
   
  0.476
guk1
Guanylate kinase 1a.
   
  0.441
LOC105416883
ZP domain-containing protein.
   
 0.429
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.