Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
LOC101064170IF rod domain-containing protein; Belongs to the intermediate filament family. (450 aa)    
Predicted Functional Partners:
GAN
Gigaxonin.
    
 
 0.614
H2SH83_TAKRU
IF rod domain-containing protein; Belongs to the intermediate filament family.
    
 0.609
grin1
Uncharacterized protein.
   
  0.555
LOC101074532
Glutamate receptor, ionotropic, N-methyl D-aspartate 1a.
   
  0.555
pcgf6
Polycomb group ring finger 6.
    
 
 0.520
LOC101061760
Un-named hu7910.
   
 0.520
LOC101077396
Solute carrier family 2 member 15a; Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family.
    
 
 0.519
LOC101072320
Glial fibrillary acidic protein; Belongs to the intermediate filament family.
   
   0.515
fbxw4
F-box and WD repeat domain containing 4.
      
 0.514
LOC105416883
ZP domain-containing protein.
   
 0.506
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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