Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
LOC101067604Cyclin-dependent kinase 11B. (812 aa)    
Predicted Functional Partners:
srgap2
SLIT-ROBO Rho GTPase activating protein 2.
   
  
 0.891
ccnl1
Cyclin L1a; Belongs to the cyclin family.
   
 
 0.834
sap30bp
SAP30 binding protein.
   
   0.767
LOC101074558
DEAD (Asp-Glu-Ala-Asp) box polypeptide 43; Belongs to the DEAD box helicase family.
     
 0.707
ccnc
Cyclin C; Belongs to the cyclin family.
     
 0.704
LOC101067663
Uncharacterized protein.
    
 
 0.701
haus8
Si:ch211-153a8.4.
     
 0.668
aplp2
Amyloid beta (A4) precursor-like protein 2.
      
 0.650
mea1
Male-enhanced antigen 1.
      
 0.632
nup98
Nucleoporin 98.
      
 0.625
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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