STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
foxa1Forkhead box A1. (396 aa)    
Predicted Functional Partners:
gata3
GATA binding protein 3.
    
 0.807
esr1
Estrogen receptor; The steroid hormones and their receptors are involved in the regulation of eukaryotic gene expression and affect cellular proliferation and differentiation in target tissues.
    
 0.781
LOC101067852
Uncharacterized protein.
   
 0.758
LOC101080066
Androgen receptor.
   
 0.758
gata4
GATA binding protein 4.
   
 0.732
gata6
GATA binding protein 6.
   
 0.732
mixl1
Mix paired-like homeobox.
   
 
 0.698
GATA2
GATA binding protein 2.
    
 0.679
LOC101076071
GATA binding protein 2a.
    
 0.679
pgr
Progesterone receptor.
    
 0.671
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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