Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
H2SR80_TAKRUFamily with sequence similarity 120B. (472 aa)    
Predicted Functional Partners:
psmb1
Proteasome subunit beta.
     
 0.777
pdcd2
Programmed cell death 2.
      
 0.748
nkain2
Sodium/potassium transporting ATPase interacting 2.
      
 0.721
LOC101061126
Dual specificity phosphatase 22a; Belongs to the protein-tyrosine phosphatase family. Non- receptor class dual specificity subfamily.
    
 0.633
LOC101072874
Dual specificity phosphatase 22b; Belongs to the protein-tyrosine phosphatase family. Non- receptor class dual specificity subfamily.
    
 0.632
Fancm
ERCC4 domain-containing protein.
    
 0.615
nsmce1
NSE1 homolog, SMC5-SMC6 complex component.
      
 0.600
fbxw11
F-box and WD repeat domain containing 11b.
     
 0.557
mus81
MUS81 structure-specific endonuclease subunit.
    
 0.554
LOC101074926
Proteasome subunit beta.
     
 0.542
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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