STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC101075178Uncharacterized protein; Belongs to the TOM1 family. (497 aa)    
Predicted Functional Partners:
LOC101078355
Toll interacting protein.
   
 
 0.733
TOLLIP
Toll-interacting protein.
   
 
 0.733
ENSTRUP00000047861
Uncharacterized protein; Belongs to the small GTPase superfamily. Arf family.
    
 0.592
LOC101068809
ADP-ribosylation factor 6b; Belongs to the small GTPase superfamily. Arf family.
    
 0.592
arl15
ADP-ribosylation factor-like 15a.
    
 0.592
ENSTRUP00000068803
annotation not available
   
 
 0.585
uba52
Ubiquitin A-52 residue ribosomal protein fusion product 1.
    
   0.535
rps27a
Ribosomal protein S27a.
    
   0.535
cltc
Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family.
    
 
 0.485
LOC101077362
Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family.
    
 
 0.485
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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