STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
rbksRibokinase; Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5-phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway. (312 aa)    
Predicted Functional Partners:
Rpia
Ribose 5-phosphate isomerase A.
    
 0.966
LOC101069588
Transketolase b.
  
 0.950
LOC101076831
Transketolase a.
  
 0.950
TKT
Transketolase.
  
 0.950
pgm2
Phosphoglucomutase 2.
  
 
 0.946
LOC101076743
Phosphoribosyl pyrophosphate synthetase 1B.
   
 0.945
LOC101066493
Phosphoribosyl pyrophosphate synthetase 2.
   
 0.945
dera
Deoxyribose-phosphate aldolase (putative).
    
 0.937
LOC101076683
Uncharacterized protein; Belongs to the phosphohexose mutase family.
   
 
 0.927
sfi1
Protein SFI1 homolog isoform X1.
      
 0.860
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.