STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
kctd16Potassium channel tetramerization domain containing 16b. (429 aa)    
Predicted Functional Partners:
cul3
Cullin 3a; Belongs to the cullin family.
    
 0.699
cand1
Cullin-associated and neddylation-dissociated 1.
     
  0.513
ccdc22
Coiled-coil domain containing 22.
     
  0.500
LOC101070359
COMM domain containing 4.
     
  0.500
commd5
COMM domain-containing protein.
     
  0.496
LOC115248454
RING-box protein 1.
    
  0.467
LOC101079814
Ring-box 1, E3 ubiquitin protein ligase.
    
  0.467
dcun1d4
DCN1-like protein.
     
  0.459
nrp1
Neuropilin; Belongs to the neuropilin family.
   
  
 0.431
commd6
COMM domain containing 6.
     
  0.425
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
Server load: low (26%) [HD]