Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
prune1Prune exopolyphosphatase. (426 aa)    
Predicted Functional Partners:
hddc3
HD domain containing 3.
     
 0.917
H2V9X5_TAKRU
Prune homolog 2 with BCH domain.
 
    
 0.916
LOC101065819
Glycogen synthase kinase 3 alpha a; Belongs to the protein kinase superfamily.
    
 
 0.817
gsk3b
Glycogen synthase kinase 3 beta, genome duplicate b; Belongs to the protein kinase superfamily.
    
 
 0.817
LOC101062691
Glycogen synthase kinase 3 alpha b; Belongs to the protein kinase superfamily.
    
 
 0.817
bnip2
BCL2 interacting protein 2.
 
      0.717
utp20
UTP20 small subunit processome component.
      
 0.697
LOC101074057
CRAL-TRIO domain-containing protein.
 
      0.656
ppp1r11
Uncharacterized protein.
      
 0.633
gmppb
GDP-mannose pyrophosphorylase B.
   
   0.629
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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